Software
From my pre-industry days or volunteer work.
orphanet-parser: Python package to access rare disease data from Orphanet.
Bits in Bio community job board: Bits in Bio community job board: Job board for computational roles in biotech. I built and maintain the page (React/JavaScript).
chicane: Toolkit for processing and analyzing capture Hi-C data, implemented as an R package.
eikosograms: R package for visualizing probabilities. I wrote the first draft of the package.
varitas: R package with end-to-end pipeline for variant calling in targeted sequencing datasets. I wrote the first draft of the pipeline.
Machine Learning for Protest Events Data System (MPEDS): Python tool for parsing news articles to extract information about protest events. I contributed by refactoring the code into a package, implementing unit tests, setting up the Docker container, and building the website.
Data Visualization
chRistmas: Christmas cards made in R.
Publications
See PubMed.